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1.

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.

Lu, Jing; du Plessis, Louis; Liu, Zhe; Hill, Verity; Kang, Min; Lin, Huifang; Sun, Jiufeng; François, Sarah; Kraemer, Moritz U G; Faria, Nuno R; McCrone, John T; Peng, Jinju; Xiong, Qianling; Yuan, Runyu; Zeng, Lilian; Zhou, Pingping; Liang, Chumin; Yi, Lina; Liu, Jun; Xiao, Jianpeng; Hu, Jianxiong; Liu, Tao; Ma, Wenjun; Li, Wei; Su, Juan; Zheng, Huanying; Peng, Bo; Fang, Shisong; Su, Wenzhe; Li, Kuibiao; Sun, Ruilin; Bai, Ru; Tang, Xi; Liang, Minfeng; Quick, Josh; Song, Tie; Rambaut, Andrew; Loman, Nick; Raghwani, Jayna; Pybus, Oliver G; Ke, Changwen.

Cell; 181(5): 997-1003.e9, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32359424

2.

Neuron-Astrocyte Metabolic Coupling Protects against Activity-Induced Fatty Acid Toxicity.

Ioannou, Maria S; Jackson, Jesse; Sheu, Shu-Hsien; Chang, Chi-Lun; Weigel, Aubrey V; Liu, Hui; Pasolli, H Amalia; Xu, C Shan; Pang, Song; Matthies, Doreen; Hess, Harald F; Lippincott-Schwartz, Jennifer; Liu, Zhe.

Cell; 177(6): 1522-1535.e14, 2019 05 30.

Artículo en Inglés | MEDLINE | ID: mdl-31130380

3.

Tryptophan-derived microbial metabolites activate the aryl hydrocarbon receptor in tumor-associated macrophages to suppress anti-tumor immunity.

Hezaveh, Kebria; Shinde, Rahul S; Klötgen, Andreas; Halaby, Marie Jo; Lamorte, Sara; Ciudad, M Teresa; Quevedo, Rene; Neufeld, Luke; Liu, Zhe Qi; Jin, Robbie; Grünwald, Barbara T; Foerster, Elisabeth G; Chaharlangi, Danica; Guo, Mengdi; Makhijani, Priya; Zhang, Xin; Pugh, Trevor J; Pinto, Devanand M; Co, Ileana L; McGuigan, Alison P; Jang, Gun Ho; Khokha, Rama; Ohashi, Pamela S; O'Kane, Grainne M; Gallinger, Steven; Navarre, William W; Maughan, Heather; Philpott, Dana J; Brooks, David G; McGaha, Tracy L.

Immunity; 55(2): 324-340.e8, 2022 02 08.

Artículo en Inglés | MEDLINE | ID: mdl-35139353

4.

Lighting Up Genes in Single Cells at Scale.

Liu, Zhe.

Cell; 162(4): 705-7, 2015 Aug 13.

Artículo en Inglés | MEDLINE | ID: mdl-26276626

5.

A PARylation-phosphorylation cascade promotes TOPBP1 loading and RPA-RAD51 exchange in homologous recombination.

Zhao, Jiao; Tian, Shanshan; Guo, Qiushi; Bao, Kaiwen; Yu, Guohui; Wang, Xiaodan; Shen, Xilin; Zhang, Jieyou; Chen, Jiaxin; Yang, Ying; Liu, Ling; Li, Xiangchun; Hao, Jihui; Yang, Na; Liu, Zhe; Ai, Ding; Yang, Jie; Zhu, Yi; Yao, Zhi; Ma, Shuai; Zhang, Kai; Shi, Lei.

Mol Cell; 82(14): 2571-2587.e9, 2022 07 21.

Artículo en Inglés | MEDLINE | ID: mdl-35597237

6.

Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.

Chen, Jiji; Zhang, Zhengjian; Li, Li; Chen, Bi-Chang; Revyakin, Andrey; Hajj, Bassam; Legant, Wesley; Dahan, Maxime; Lionnet, Timothée; Betzig, Eric; Tjian, Robert; Liu, Zhe.

Cell; 156(6): 1274-1285, 2014 Mar 13.

Artículo en Inglés | MEDLINE | ID: mdl-24630727

7.

Two-Parameter Mobility Assessments Discriminate Diverse Regulatory Factor Behaviors in Chromatin.

Lerner, Jonathan; Gomez-Garcia, Pablo Aurelio; McCarthy, Ryan L; Liu, Zhe; Lakadamyali, Melike; Zaret, Kenneth S.

Mol Cell; 79(4): 677-688.e6, 2020 08 20.

Artículo en Inglés | MEDLINE | ID: mdl-32574554

8.

Phase separation of Hippo signalling complexes.

Bonello, Teresa T; Cai, Danfeng; Fletcher, Georgina C; Wiengartner, Kyler; Pengilly, Victoria; Lange, Kimberly S; Liu, Zhe; Lippincott-Schwartz, Jennifer; Kavran, Jennifer M; Thompson, Barry J.

EMBO J; 42(6): e112863, 2023 03 15.

Artículo en Inglés | MEDLINE | ID: mdl-36807601

9.

ecDNA hubs drive cooperative intermolecular oncogene expression.

Hung, King L; Yost, Kathryn E; Xie, Liangqi; Shi, Quanming; Helmsauer, Konstantin; Luebeck, Jens; Schöpflin, Robert; Lange, Joshua T; Chamorro González, Rocío; Weiser, Natasha E; Chen, Celine; Valieva, Maria E; Wong, Ivy Tsz-Lo; Wu, Sihan; Dehkordi, Siavash R; Duffy, Connor V; Kraft, Katerina; Tang, Jun; Belk, Julia A; Rose, John C; Corces, M Ryan; Granja, Jeffrey M; Li, Rui; Rajkumar, Utkrisht; Friedlein, Jordan; Bagchi, Anindya; Satpathy, Ansuman T; Tjian, Robert; Mundlos, Stefan; Bafna, Vineet; Henssen, Anton G; Mischel, Paul S; Liu, Zhe; Chang, Howard Y.

Nature; 600(7890): 731-736, 2021 12.

Artículo en Inglés | MEDLINE | ID: mdl-34819668

10.

Reciprocal regulation of flower induction by ELF3α and ELF3ß generated via alternative promoter usage.

Wang, Peng; Li, Yu; Liu, Zhe; Li, Xuhan; Wang, Yicheng; Liu, Weijuan; Li, Xiao; Hu, Jianjian; Zhu, Wenyi; Wang, Changquan; Li, Shan; Gu, Tingting; Xu, Dongqing; Tang, Chao; Wang, Yingtao; Li, Chao; Zhang, Shaoling; Wu, Juyou.

Plant Cell; 35(6): 2095-2113, 2023 05 29.

Artículo en Inglés | MEDLINE | ID: mdl-36883592

11.

Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.

Liu, Zhe; Scannell, Devin R; Eisen, Michael B; Tjian, Robert.

Cell; 146(5): 720-31, 2011 Sep 02.

Artículo en Inglés | MEDLINE | ID: mdl-21884934

12.

Discovering DNA shape motifs with multiple DNA shape features: generalization, methods, and validation.

Chen, Nanjun; Yu, Jixiang; Liu, Zhe; Meng, Lingkuan; Li, Xiangtao; Wong, Ka-Chun.

Nucleic Acids Res; 52(8): 4137-4150, 2024 May 08.

Artículo en Inglés | MEDLINE | ID: mdl-38572749

13.

Optimal inference of molecular interaction dynamics in FRET microscopy.

Kamino, Keita; Kadakia, Nirag; Avgidis, Fotios; Liu, Zhe-Xuan; Aoki, Kazuhiro; Shimizu, Thomas S; Emonet, Thierry.

Proc Natl Acad Sci U S A; 120(15): e2211807120, 2023 04 11.

Artículo en Inglés | MEDLINE | ID: mdl-37014867

14.

Cryo-EM structure of the Mon1-Ccz1-RMC1 complex reveals molecular basis of metazoan RAB7A activation.

Yong, Xin; Jia, Guowen; Liu, Zhe; Zhou, Chunzhuang; Yi, Jiamin; Tang, Yingying; Chen, Li; Chen, Lu; Wang, Yuan; Sun, Qingxiang; Billadeau, Daniel D; Su, Zhaoming; Jia, Da.

Proc Natl Acad Sci U S A; 120(22): e2301725120, 2023 05 30.

Artículo en Inglés | MEDLINE | ID: mdl-37216550

15.

Biomolecular Condensates and Their Links to Cancer Progression.

Cai, Danfeng; Liu, Zhe; Lippincott-Schwartz, Jennifer.

Trends Biochem Sci; 46(7): 535-549, 2021 07.

Artículo en Inglés | MEDLINE | ID: mdl-33579564

16.

Deep transfer learning for clinical decision-making based on high-throughput data: comprehensive survey with benchmark results.

Toseef, Muhammad; Olayemi Petinrin, Olutomilayo; Wang, Fuzhou; Rahaman, Saifur; Liu, Zhe; Li, Xiangtao; Wong, Ka-Chun.

Brief Bioinform; 24(4)2023 07 20.

Artículo en Inglés | MEDLINE | ID: mdl-37455245

17.

Noncoding SNP at rs1663689 represses ADGRG6 via interchromosomal interaction and reduces lung cancer progression.

Lei, Xinyue; Tian, Xiaoling; Wang, Hao; Xu, Xinran; Li, Guoli; Liu, Wenxu; Wang, Dan; Xiao, Zengtuan; Zhang, Mengzhe; Li, Mulin Jun; Zhang, Zhenfa; Ma, Zhenyi; Liu, Zhe.

EMBO Rep; 24(7): e56212, 2023 Jul 05.

Artículo en Inglés | MEDLINE | ID: mdl-37154297

18.

Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.

Kieffer-Kwon, Kyong-Rim; Nimura, Keisuke; Rao, Suhas S P; Xu, Jianliang; Jung, Seolkyoung; Pekowska, Aleksandra; Dose, Marei; Stevens, Evan; Mathe, Ewy; Dong, Peng; Huang, Su-Chen; Ricci, Maria Aurelia; Baranello, Laura; Zheng, Ying; Tomassoni Ardori, Francesco; Resch, Wolfgang; Stavreva, Diana; Nelson, Steevenson; McAndrew, Michael; Casellas, Adriel; Finn, Elizabeth; Gregory, Charles; St Hilaire, Brian Glenn; Johnson, Steven M; Dubois, Wendy; Cosma, Maria Pia; Batchelor, Eric; Levens, David; Phair, Robert D; Misteli, Tom; Tessarollo, Lino; Hager, Gordon; Lakadamyali, Melike; Liu, Zhe; Floer, Monique; Shroff, Hari; Aiden, Erez Lieberman; Casellas, Rafael.

Mol Cell; 67(4): 566-578.e10, 2017 Aug 17.

Artículo en Inglés | MEDLINE | ID: mdl-28803781

19.

Atomic-scale probing of heterointerface phonon bridges in nitride semiconductor.

Li, Yue-Hui; Qi, Rui-Shi; Shi, Ruo-Chen; Hu, Jian-Nan; Liu, Zhe-Tong; Sun, Yuan-Wei; Li, Ming-Qiang; Li, Ning; Song, Can-Li; Wang, Lai; Hao, Zhi-Biao; Luo, Yi; Xue, Qi-Kun; Ma, Xu-Cun; Gao, Peng.

Proc Natl Acad Sci U S A; 119(8)2022 Feb 22.

Artículo en Inglés | MEDLINE | ID: mdl-35181607

20.

Target genes regulated by CLEC16A intronic region associated with common variable immunodeficiency.

Huang, Xubo; Huang, Jinxia; Li, Xiumei; Fan, Jingxian; Zhou, Desheng; Qu, Hui-Qi; Glessner, Joseph T; Ji, Dandan; Jia, Qi; Ding, Zhiyong; Wang, Nan; Wei, Wei; Lyu, Xing; Li, Mulin Jun; Liu, Zhe; Liu, Wei; Wei, Yongjie; Hakonarson, Hakon; Xia, Qianghua; Li, Jin.

J Allergy Clin Immunol; 2024 Jan 06.

Artículo en Inglés | MEDLINE | ID: mdl-38191060

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